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Table 1 Summary of small RNA sequencing data

From: Effect of differentiation on microRNA expression in bovine skeletal muscle satellite cells by deep sequencing

Type MDSC-P MDSC-D1 MDSC-D3
Count % Count % Count %
total_reads 6000000   6000000   6000000  
high_quality 5984373 100 % 5984335 100 % 5984569 100 %
3'adaptor_null 2916 0.05 % 2967 0.05 % 2901 0.05 %
insert_null 3115 0.05 % 1252 0.02 % 1408 0.02 %
5'adaptor_contaminants 86464 1.44 % 54566 0.91 % 39651 0.66 %
smaller_than_18nt 20713 0.35 % 3297 0.06 % 4615 0.08 %
polyA 110 0.00 % 65 0.00 % 31 0.00 %
clean_reads 5871055 98.11 % 5922188 98.96 % 5935963 99.19 %
  1. Note: total_reads: total sequenced reads, which is required to be greater than 5 M in general; high_quality: number of high quality reads with no N, no more than 4 bases whose quality score was lower than 10 and no more than 6 bases whose quality score was lower than 13; 3'adaptor_null: number of reads with no 3'adaptor; insert_null: number of reads with no insertion; 5'adaptor_contaminants: number of 5'contaminants; smaller_than_18nt: number of reads less than 18 nt generally. Small RNA tags were between 18 and 30 nt long, so too short tags should be removed from data for further analysis; polyA: number of reads with polyA; clean_reads: number of clean reads after adaptors and contaminants were removed, which were used in the following analysis