Systematic identification of the key candidate genes in breast cancer stroma

Wang, Yanxia; Xu, Hui; Zhu, Baoan; Qiu, Zhenling; Lin, Zaijun

doi:10.1186/s11658-018-0110-4

Cellular & Molecular Biology Letters

Table 1 The common genes altered in both the GSE26910 and GSE10797 datasets

From: Systematic identification of the key candidate genes in breast cancer stroma

Overlapping gene	logFC (GSE26910)	logFC (GSE10797)	Overlapping gene	logFC (GSE26910)	logFC (GSE10797)
FOSB	−3.29	−1.57	CNTRL	− 0.74	− 0.66
CLDN5	−3.27	− 0.94	AV720803	− 0.74	− 1.31
IL33	−3.14	−1.06	DYNC2LI1	−0.72	− 0.71
CD36	−3.02	−0.82	CITED1	−0.71	−1.70
CFD	−3.02	−1.87	CD59	−0.69	−1.25
TGFBR3	−2.99	−1.22	TSPAN14	−0.65	−0.88
SEMA3G	−2.92	−0.95	SPTBN1	−0.65	− 0.34
FAM189A2	−2.83	−1.57	CNKSR2	−0.65	−1.04
ZBTB16	−2.80	−0.51	SEPP1	− 0.65	−1.16
RELN	−2.72	−1.29	IFNGR1	− 0.61	−0.75
APOD	−2.67	−2.04	MBNL2	−0.60	− 0.66
PPL	−2.56	−1.39	GLTSCR1L	−0.59	− 0.95
DLK1	−2.52	−0.56	EXOSC10	−0.59	−1.55
SYNM	−2.43	−2.95	DST	−0.59	− 0.87
FOS	−2.40	−0.91	U2SURP	−0.55	−1.09
SPRY2	−2.17	−1.40	SNORD23	−0.55	−1.32
ITIH5	−2.09	−0.87	MCCC1	−0.52	−1.02
AV764378	−1.96	− 1.38	ZFP36L2	−0.49	−0.42
TNXB	−1.74	−0.60	CERS1	−0.44	−0.68
JUN	−1.72	−2.08	TLE4	−0.43	−0.67
AMOTL2	−1.71	−0.61	GABARAPL3	−0.43	− 0.96
ABCA8	−1.68	−2.42	NCALD	−0.43	−1.52
DUSP6	−1.61	−1.06	RPL7	−0.40	−0.55
LHFP	−1.50	−1.93	GSN	−0.39	−0.52
PTH2R	−1.49	−0.87	EZH1	−0.37	−0.68
CLEC1A	−1.42	−0.82	COQ8A	−0.37	−1.35
CXCL1	−1.39	−0.79	RPS6	−0.37	−0.66
SFRP1	−1.37	−1.87	ERCC5	−0.36	−1.74
EGR1	−1.34	−0.60	TJP2	−0.35	−1.16
RGL1	−1.33	−0.97	SRSF4	−0.34	−0.80
FGF13	−1.28	−0.99	SUMO3	0.43	0.55
HMGN3	−1.27	−1.77	BASP1	0.50	1.01
CASQ2	−1.24	−0.50	COMMD10	0.50	1.11
COLGALT2	−1.16	−0.75	FAM89B	0.52	0.55
ACACB	−1.14	−1.22	HILPDA	0.59	0.83
OLFML2A	−1.14	−0.46	CAPZB	0.60	0.40
ENOSF1	−1.12	−0.88	FCGR2A	0.63	1.59
ABCA5	−1.10	−1.23	LEF1	0.64	0.80
GHR	−1.09	−1.47	PSMB5	0.64	1.16
ITGA6	−1.08	−0.65	CERS6	0.67	0.92
ADRB2	−1.08	−2.27	CALU	0.75	0.76
VPS37B	−1.05	−0.59	MAGED1	0.76	0.92
ATF3	−1.05	−1.43	TLL2	0.77	0.83
CCNL1	−1.04	−0.94	COL1A1	0.78	1.30
IGFBP6	−1.01	−1.28	SPARC	0.79	1.58
IER2	−1.00	−2.04	S100P	0.91	2.87
ERV3–2	−1.00	−1.16	TNFRSF12A	1.03	0.56
ECHDC2	−0.98	−1.90	THY1	1.07	0.61
MAOA	−0.97	−0.44	STAT1	1.09	0.66
GNAZ	−0.95	−0.91	RAI14	1.16	0.90
CBX7	−0.95	−0.98	COL5A2	1.18	1.76
MID1	−0.93	−0.75	NID2	1.20	1.28
ANXA1	−0.93	−2.12	SPON1	1.25	1.20
PDE9A	−0.92	−1.38	POSTN	1.43	1.62
MAFF	−0.91	−1.59	VCAN	1.45	0.96
TLE2	−0.89	−0.88	COL5A1	1.55	1.65
SH3BP5	−0.89	−1.00	FN1	1.56	2.56
ICAM2	−0.89	−0.84	BGN	1.61	1.81
STAB2	−0.87	−0.46	AEBP1	1.64	1.58
MAP3K8	−0.87	−0.75	PLXDC2	1.67	1.10
CIRBP	−0.85	−1.08	FAP	1.77	1.11
TPD52L1	−0.85	−0.99	LRRC15	1.78	1.89
NFIB	−0.84	−1.11	SNX10	1.84	1.70
HDAC4	−0.84	−1.46	SMYD3	1.91	0.52
SESN1	−0.83	−0.40	ASPN	1.94	3.02
PER2	−0.82	−1.08	CDH11	1.99	0.84
LOC101929115	−0.81	−1.43	IFI30	2.23	0.62
HMGCR	−0.80	−0.57	GREM1	2.41	1.01
AUH	−0.79	−1.11	MMP1	3.05	1.84
C1orf115	−0.79	−0.48	SULF1	3.12	1.66
MIR4738	−0.79	−1.29	MATN3	3.22	1.59
CXCL2	−0.77	−2.91	COL11A1	5.56	2.33
CYP21A1P	−0.77	−2.03	COL10A1	5.60	1.52

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ISSN: 1689-1392

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