Transcriptome profiling revealed multiple genes and ECM-receptor interaction pathways that may be associated with breast cancer

Table 1 The details of the transcriptome assembly result

Sample name	Raw reads	Clean reads	Clean bases	Total mapping rate (%)	Q20 (%)	Q30 (%)	Exonic	Intronic
N1	26,062,090	26,062,090	7.82G	93.37	96.91	92.34	81.18	15.28
N2	28,333,875	28,333,875	8.5G	92.49	96.97	92.61	75	20.16
N3	23,342,517	23,342,517	7.0G	93.59	97.11	92.8	74.14	20.96
N4	31,528,594	30,258,328	9.08G	86.85	96.09	90.75	89.19	7.88
N5	23,513,213	22,160,567	6.65G	90.18	95.2	88.91	86.13	10.32
N6	31,572,030	29,732,384	8.92G	89.70	95	88.59	85.46	10.98
T1	27,667,902	27,667,902	8.3G	93.19	96.88	92.33	83.1	13.85
T2	26,369,158	26,369,158	7.91G	93.89	96.84	92.3	72.62	22.07
T3	26,583,360	26,583,360	7.98G	92.58	97.02	92.73	74.98	20.07
T4	23,947,809	22,670,303	6.8G	91.81	95.49	89.41	84.2	12.96
T5	36,079,555	34,114,397	10.23G	92.74	95.39	89.25	84.71	12.06
T6	25,419,621	24,060,173	7.22G	93.06	95.46	89.39	82.59	13.8

ISSN: 1689-1392