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Table 1 The details of the transcriptome assembly result

From: Transcriptome profiling revealed multiple genes and ECM-receptor interaction pathways that may be associated with breast cancer

Sample name Raw reads Clean reads Clean bases Total mapping rate (%) Q20 (%) Q30 (%) Exonic Intronic
N1 26,062,090 26,062,090 7.82G 93.37 96.91 92.34 81.18 15.28
N2 28,333,875 28,333,875 8.5G 92.49 96.97 92.61 75 20.16
N3 23,342,517 23,342,517 7.0G 93.59 97.11 92.8 74.14 20.96
N4 31,528,594 30,258,328 9.08G 86.85 96.09 90.75 89.19 7.88
N5 23,513,213 22,160,567 6.65G 90.18 95.2 88.91 86.13 10.32
N6 31,572,030 29,732,384 8.92G 89.70 95 88.59 85.46 10.98
T1 27,667,902 27,667,902 8.3G 93.19 96.88 92.33 83.1 13.85
T2 26,369,158 26,369,158 7.91G 93.89 96.84 92.3 72.62 22.07
T3 26,583,360 26,583,360 7.98G 92.58 97.02 92.73 74.98 20.07
T4 23,947,809 22,670,303 6.8G 91.81 95.49 89.41 84.2 12.96
T5 36,079,555 34,114,397 10.23G 92.74 95.39 89.25 84.71 12.06
T6 25,419,621 24,060,173 7.22G 93.06 95.46 89.39 82.59 13.8