Table 1 Identification of DEGs involved in chondrogenesis and cartilage development
Gene name | Gene expression level (FPKM) | Fold change | FDR | |
|---|---|---|---|---|
Brow tines | Main beams | log2 FPKM (main beams/brow tines) | ||
Fibronectin (Fn1) | 44.60 | 190.37 | 2.09 | 0 |
Collagen alpha-1(II) chain (Col2a1) | 20.41 | 101.11 | 2.31 | 0 |
Aggrecan core protein (Acan) | 7.71 | 31.83 | 2.05 | 4.02E-252 |
Transcription factor SOX-9 (Sox9) | 5.83 | 24.54 | 2.07 | 1.59E-52 |
Basement membrane-specific heparan sulfate proteoglycan core protein (Hspg2) | 3.75 | 18.24 | 2.28 | 0 |
Versican core protein (Vcan) | 1.40 | 6.78 | 2.28 | 5.44E-22 |
Pappalysin-2 (Pappa2) | 1.40 | 6.53 | 2.22 | 8.90E-19 |
Protein sidekick-2 (Sdk2) | 1.30 | 5.84 | 2.17 | 2.22E-30 |
Neurofibromin (Nf1) | 0.95 | 5.73 | 2.59 | 1.99E-06 |
Transcription factor SOX-6 (Sox6) | 1.07 | 4.50 | 2.07 | 1.38E-14 |
Runt-related transcription factor 2 (Runx2) | 0.40 | 3.82 | 3.26 | 2.97E-07 |
Forkhead box protein L2 (Foxl2) | 0.00 | 3.57 | 11.80 | 2.64E-11 |
cGMP-dependent protein kinase 2 (Prkg2) | 0.33 | 2.92 | 3.14 | 5.17E-08 |
Protein FAM101B (Fam101b) | 0.06 | 1.81 | 4.84 | 4.08E-07 |
Collagen alpha-1(XI) chain (Col11a1) | 0.12 | 1.66 | 3.79 | 1.38E-63 |
Fibroblast growth factor receptor 3 (Fgfr3) | 0.00 | 0.18 | 7.47 | 1.82E-04 |