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Table 2 Identification of DEGs involved in endochondral ossification and bone formation

From: Comparative transcriptome analysis of the main beam and brow tine of sika deer antler provides insights into the molecular control of rapid antler growth

Gene name

Gene expression level (FPKM)

Fold change

FDR

Brow tines

Main beams

log2 FPKM (main beams/brow tines)

Collagen alpha-1(X) chain (Col10a1)

1008.17

231.43

−2.12

0

Osteopontin (Spp1)

743.90

112.04

−2.73

0

Bone sialoprotein 2 (Ibsp)

495.27

112.68

−2.14

0

Tartrate-resistant acid phosphatase type 5 (Acp5)

316.17

22.63

−3.80

0

Osteocalcin (Ocn)

123.45

28.47

−2.12

3.24E-182

Protein S100-A9 (S100a9)

95.16

15.14

−2.65

8.41E-284

Periostin (Postn)

34.67

3.13

−3.47

3.76E-222

Matrix metalloproteinase-9 (Mmp9)

24.65

4.94

−2.32

1.43E-206

Ras-related C3 botulinum toxin substrate 2(Rac2)

17.91

3.87

−2.21

1.53E-136

C-type lectin domain family 3 member A (Clec3a)

17.57

2.49

−2.82

1.21E-148

Metalloendopeptidase homolog PEX (Phex)

12.26

1.37

−3.16

2.49E-43

Dentin matrix acidic phosphoprotein 1 (Dmp1)

10.88

0.10

−6.80

6.58E-185

Sorting nexin-10 (Snx10)

10.70

2.27

−2.23

5.56E-45

Cytokine-like protein 1 (Cytl1)

8.39

1.63

−2.36

5.85E-30

Megakaryocyte-associated tyrosine-protein kinase (Matk)

7.78

0.88

−3.14

9.94E-23

Disintegrin and metalloproteinase domain-containing protein 8 (Adam8)

5.51

1.17

−2.24

7.38E-17

Osteoclast-associated immunoglobulin-like receptor (Oscar)

4.21

0.61

−2.80

6.95E-12