Skip to main content

Table 5 Crosstalk between the lncRNA (CDKN2B-AS1), mRNAs, and pseudogenes in competing endogenous RNA (ceRNA) network.

From: Association of cyclin-dependent kinase inhibitor 2B antisense RNA 1 gene expression and rs2383207 variant with breast cancer risk and survival

ceRNA symbol ceRNA name Molecule type Location ceRNA gene Type FDR Pan-cancer number
AL160290.2 Cytochrome C Oxidase Subunit VIIc (COX7C) LincRNA 2.00E−03 14
RPL39P26 Ribosomal Protein L39 Pseudogene 26 Processed pseudogene 2.00E−03 8
CLCN1 Chloride Voltage-Gated Channel 1 Ion channel Plasma membrane Protein-coding 7.94E−04 17
ARHGAP44 Rho GTPase Activating Protein 44 Other Cytoplasm Protein-coding 7.94E−04 13
RBM6 RNA Binding Motif Protein 6 Other Nucleus Protein-coding 7.94E−04 19
AK9 Adenylate Kinase 9 Kinase Nucleus Protein-coding 8.97E−04 18
USP2 Ubiquitin Specific Peptidase 2 Peptidase Cytoplasm Protein-coding 8.78E−04 17
SPRYD7 SPRY Domain Containing 7 Other Other Protein-coding 7.94E−04 10
CUL3 Cullin 3 Enzyme Nucleus Protein-coding 7.97E−04 9
EPHA7 EPH Receptor A7 Kinase Plasma membrane Protein-coding 1.30E−03 10
TLK1 Tousled Like Kinase 1 Kinase Nucleus Protein-coding 7.94E−04 10
ICMT Isoprenylcysteine carboxyl methyltransferase Enzyme Cytoplasm Protein-coding 1.83E−03 11
GPD2 Glycerol-3-phosphate dehydrogenase 2 Enzyme Cytoplasm Protein-coding 2.26E−03 15
LRRC58 Leucine-Rich Repeat Containing 58 Other Other Protein-coding 1.49E−03 14
  1. FDR false discovery rate