Table 5 Crosstalk between the lncRNA (CDKN2B-AS1), mRNAs, and pseudogenes in competing endogenous RNA (ceRNA) network.
ceRNA symbol | ceRNA name | Molecule type | Location | ceRNA gene Type | FDR | Pan-cancer number |
|---|---|---|---|---|---|---|
AL160290.2 | Cytochrome C Oxidase Subunit VIIc (COX7C) | – | – | LincRNA | 2.00E−03 | 14 |
RPL39P26 | Ribosomal Protein L39 Pseudogene 26 | – | – | Processed pseudogene | 2.00E−03 | 8 |
CLCN1 | Chloride Voltage-Gated Channel 1 | Ion channel | Plasma membrane | Protein-coding | 7.94E−04 | 17 |
ARHGAP44 | Rho GTPase Activating Protein 44 | Other | Cytoplasm | Protein-coding | 7.94E−04 | 13 |
RBM6 | RNA Binding Motif Protein 6 | Other | Nucleus | Protein-coding | 7.94E−04 | 19 |
AK9 | Adenylate Kinase 9 | Kinase | Nucleus | Protein-coding | 8.97E−04 | 18 |
USP2 | Ubiquitin Specific Peptidase 2 | Peptidase | Cytoplasm | Protein-coding | 8.78E−04 | 17 |
SPRYD7 | SPRY Domain Containing 7 | Other | Other | Protein-coding | 7.94E−04 | 10 |
CUL3 | Cullin 3 | Enzyme | Nucleus | Protein-coding | 7.97E−04 | 9 |
EPHA7 | EPH Receptor A7 | Kinase | Plasma membrane | Protein-coding | 1.30E−03 | 10 |
TLK1 | Tousled Like Kinase 1 | Kinase | Nucleus | Protein-coding | 7.94E−04 | 10 |
ICMT | Isoprenylcysteine carboxyl methyltransferase | Enzyme | Cytoplasm | Protein-coding | 1.83E−03 | 11 |
GPD2 | Glycerol-3-phosphate dehydrogenase 2 | Enzyme | Cytoplasm | Protein-coding | 2.26E−03 | 15 |
LRRC58 | Leucine-Rich Repeat Containing 58 | Other | Other | Protein-coding | 1.49E−03 | 14 |