Table 1 Detailed information of differentially expressed circular RNAs (circRNAs) identified by high-throughput RNA sequencing
From: Circular RNA expression profile in transgenic diabetic mouse kidneys
circRNA number | Position | Fold change | Regulation | Gene Symbol | Exon information |
|---|---|---|---|---|---|
circR_1084 | chr6: 86,944,356–86,967,373 | − 5.87 | Down | Aak1 | 86,944,357–86,944,478;86,946,104–86,946,185; 86,946,861–86,946,993; 86,949,542–86,949,645; 86,950,781–86,950,860; 86,955,104–86,955,258; 86,956,259–86,956,572; 86,963,993–86,964,225; 86,965,477–86,965,634; 86,967,269–86,967,373 |
circR_760 | chr2: 65,125,892–65,151,167 | − 5.81 | Down | Cobll1 | 65,125,893–65,126,117; 65,126,208–65,126,305; 65,133,579–65,133,807; 65,136,345–65,136,546; 65,150,979–65,151,167 |
circR_801 | chr3: 146,463,184–146,493,843 | 5.93 | Up | Spata1 | 146,463,185–146,463,255; 146,465,909–146,465,996; 146,468,106–146,468,204; 146,469,625–146,469,803; 146,475,256–146,475,381; 146,476,194–146,476,302; 146,481,128–146,481,209; 146,481,767–146,481,860; 146,487,200–146,487,419 |
ircR_628 | chr19: 28,530,872–28,540,408 | 1.50 | Up | Glis3 | 28,530,873–28,531,986; 28,540,201–28,540,408 |
circR_596 | chr18: 74,577,454–74,580,534 | − 5.02 | Down | Myo5b | 74,577,455–74,577,626; 74,580,390–74,580,534 |
circR_4 | chr1: 119,567,795–119,579,077 | − 2.78 | Down | Epb41l5 | 146,463,185–146,463,255; 146,465,909–146,465,996; 146,468,106–146,468,204; 146,469,625–146,469,803; 146,475,256–146,475,381; 146,476,194–146,476,302 |
circR_627 | chr19: 28,530,872–28,531,986 | 2.28 | Up | Glis3 | 28,530,873–28,531,986 |
circR_956 | chr5: 14,520,841–14,540,801 | − 5.01 | Down | Pclo | 14,520,842–14,522,324; 14,539,410–14,540,801 |
circR_99 | chr1: 66,801,048–66,802,168 | − 1.44 | Down | Kansl1l | 66,801,049–66,802,168; |
circR_203 | chr11: 54,909,671–54,910,350 | − 5.01 | Down | Gpx3 | 54,909,672–54,910,350 |
circR_50 | chr1: 189,786,635–189,798,681 | − 5.31 | Down | Ptpn14 | 189,786,636–189,786,948; 189,798,512–189,798,681 |
circR_897 | chr4: 44,133,639–44,152,553 | − 5.26 | Down | Rnf38 | 44,133,640–44,133,761; 44,134,890–44,134,974; 44,137,555–44,137,661; 44,138,670–44,138,831; 44,142,295–44,142,465; 44,143,448–44,143,615 44,149,025–44,149,238; 44,152,360–44,152,553 |
circR_735 | chr2: 25,952,677–25,966,948 | 4.92 | Up | Camsap1 | 25,952,678–25,952,819; 25,956,247–25,956,327; 25,965,663–25,965,824; 25,966,686–25,966,948 |
circR_182 | chr11: 20,725,684–20,727,639 | − 2.79 | Down | Aftph | 20,725,685–20,727,639 |