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Table 5 The distribution of variable sites of mtDNA D-loop in pig populations

From: Genetic variation and relationships in the mitochondrial DNA D-loop region of Qinghai indigenous and commercial pig breeds

H Polymorphism sites 22456771111111111111111222222222222223333333333444 38322681122333445558888113344477788890001124699001 0115268464592356253612924703951270444012674 CHN-QH DUR LAN YOR Total
H1 CGAAT-CCGAAAA-TTTTGTTCTATAATCGTATCCAGCCTGATAGTCCTC     6 6
H2 .....-.T..TG.CACC.A....G....T.......A..C..C..C.T..    3 15 18
H3 T....-.T.TTG.CACC.A.........T.......A..C..C..C.T..   4    4
H4 .....A.T..TG-CACC.A.........T.......A.....C..C.T..     1 1
H5 .....-.T..TG.CACCCA.T....T..A..C..C..C.T..    1   1
H6 .....-.T..TG.CACC.AC........T...CT.GA..C..C..C.TC.   44 23 21 88
H7 .....-TTA..G.CACC.A.........T....T..A..C..CT.C.T..    2 1 3
H8 .....-.T...G.CACC.A..T......T.......A..C..C..C.T..    2 2 4
H9 .....-.T...G.-A.C..C........T.......A..C..C..C.T..    1   1
H10 .....-.......-A....C................A..C..C.......     2 2
H11 .....-.......-A....CC...............A..C..C..C.T..   1   3 4
H12 .....-.......-A....C........T..........C..C..C.T..   3 12 6 21
H13 ....C-.......AA..................T.....C..C..C.T..    8 2 10
H14 ....C-.......A-.................CT............TT..    2   2
H15 .....-.......CA.C.............T.............T..     1 1
H16 .....-.......-A....C.............T..........A..T..    1 1 2
H17 .....-.......-A....C.........A.G...............T..   27 1 13 41
H18 .....-.......-A....C.........A...T.............T..     1 1
H19 .....-.......-A....C.....................G.....T..   1    1
H20 .....-.......-A....C................A..........T..     1 1
H21 .....-.......-A....C................A.............    2 2 4
H22 .....-.......-A....C........T....T...........C.T..     1 1
H23 .....-.......CA.C........T....T.............T..   7   3 10
H24 .....-.......-A....C........T....TT............T..     2 2
H25 .....-.......-A....C......G.T....T..A..........T..   1 8   9
H26 .....-.......-A....C........T....T.............T.T    1   1
H27 .....-.......-A....C........T...........A......T..   1    1
H28 .....-.......-A....C........T.G..T......A......T.. 1     1
H29 .AG..-.T..TG.CACC.A.........T.......A..C..C..C.T.. 1     1
H30 .....-.T..TG.CACC.A.........T.......AT.C..C..C.T..   1    1
H31 .....-.T..TG.CACC.A.....C...T.......A..C..C..C.T.. 10 6 29 51 96
H32 .....-.T..TG.CACC.AC........T.......A..C.....C.T..   1    1
H33 .....-.T..TG.CACC.A.........T..........C..C..C.T.. 6     6
H34 .....-.T...G.CACC.A.....CG..T.......A..C.....C.T.. 81   4 12 97
H35 ...G.-.T..TG.CACC.A.........T.......A..C..C..C.T.. 1     1
H36 .....-.T..TG.CACC.A.........T.......A..C..C..C.... 4   2 3 9
H37 .....-.T..TG.CACC.A........CT.......A..C..C..C.T.. 8     8
H38 .....A.T..TG.CACC.A.........T.......A..C..C..C.T.. 1     1
H39 .....-.T..TG.CACC.AC........T....T.GA..C..C..C.T.. 1     1
H40 ....C-.......AA.................CT............TT..     1 1
H41 .....-.......-A....C........T.........T........T.. 1 4 5 11 21
42 .....-.......CA....C..............................     1 1
H43 .....-.......-A...................................    1 2 3
  1. H1–43: Different haplotypy
  2. CHN-QH: Bamei pig population
  3. DUR: Duroc pig population
  4. LAN: Landrace pig population
  5. YOR: Yorkshire pig population