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Table 5 The distribution of variable sites of mtDNA D-loop in pig populations

From: Genetic variation and relationships in the mitochondrial DNA D-loop region of Qinghai indigenous and commercial pig breeds

H

Polymorphism sites

22456771111111111111111222222222222223333333333444

38322681122333445558888113344477788890001124699001

0115268464592356253612924703951270444012674

CHN-QH

DUR

LAN

YOR

Total

H1

CGAAT-CCGAAAA-TTTTGTTCTATAATCGTATCCAGCCTGATAGTCCTC

   

6

6

H2

.....-.T..TG.CACC.A....G....T.......A..C..C..C.T..

  

3

15

18

H3

T....-.T.TTG.CACC.A.........T.......A..C..C..C.T..

 

4

  

4

H4

.....A.T..TG-CACC.A.........T.......A.....C..C.T..

   

1

1

H5

.....-.T..TG.CACCCA.T....T..A..C..C..C.T..

  

1

 

1

H6

.....-.T..TG.CACC.AC........T...CT.GA..C..C..C.TC.

 

44

23

21

88

H7

.....-TTA..G.CACC.A.........T....T..A..C..CT.C.T..

  

2

1

3

H8

.....-.T...G.CACC.A..T......T.......A..C..C..C.T..

  

2

2

4

H9

.....-.T...G.-A.C..C........T.......A..C..C..C.T..

  

1

 

1

H10

.....-.......-A....C................A..C..C.......

   

2

2

H11

.....-.......-A....CC...............A..C..C..C.T..

 

1

 

3

4

H12

.....-.......-A....C........T..........C..C..C.T..

 

3

12

6

21

H13

....C-.......AA..................T.....C..C..C.T..

  

8

2

10

H14

....C-.......A-.................CT............TT..

  

2

 

2

H15

.....-.......CA.C.............T.............T..

   

1

1

H16

.....-.......-A....C.............T..........A..T..

  

1

1

2

H17

.....-.......-A....C.........A.G...............T..

 

27

1

13

41

H18

.....-.......-A....C.........A...T.............T..

   

1

1

H19

.....-.......-A....C.....................G.....T..

 

1

  

1

H20

.....-.......-A....C................A..........T..

   

1

1

H21

.....-.......-A....C................A.............

  

2

2

4

H22

.....-.......-A....C........T....T...........C.T..

   

1

1

H23

.....-.......CA.C........T....T.............T..

 

7

 

3

10

H24

.....-.......-A....C........T....TT............T..

   

2

2

H25

.....-.......-A....C......G.T....T..A..........T..

 

1

8

 

9

H26

.....-.......-A....C........T....T.............T.T

  

1

 

1

H27

.....-.......-A....C........T...........A......T..

 

1

  

1

H28

.....-.......-A....C........T.G..T......A......T..

1

   

1

H29

.AG..-.T..TG.CACC.A.........T.......A..C..C..C.T..

1

   

1

H30

.....-.T..TG.CACC.A.........T.......AT.C..C..C.T..

 

1

  

1

H31

.....-.T..TG.CACC.A.....C...T.......A..C..C..C.T..

10

6

29

51

96

H32

.....-.T..TG.CACC.AC........T.......A..C.....C.T..

 

1

  

1

H33

.....-.T..TG.CACC.A.........T..........C..C..C.T..

6

   

6

H34

.....-.T...G.CACC.A.....CG..T.......A..C.....C.T..

81

 

4

12

97

H35

...G.-.T..TG.CACC.A.........T.......A..C..C..C.T..

1

   

1

H36

.....-.T..TG.CACC.A.........T.......A..C..C..C....

4

 

2

3

9

H37

.....-.T..TG.CACC.A........CT.......A..C..C..C.T..

8

   

8

H38

.....A.T..TG.CACC.A.........T.......A..C..C..C.T..

1

   

1

H39

.....-.T..TG.CACC.AC........T....T.GA..C..C..C.T..

1

   

1

H40

....C-.......AA.................CT............TT..

   

1

1

H41

.....-.......-A....C........T.........T........T..

1

4

5

11

21

42

.....-.......CA....C..............................

   

1

1

H43

.....-.......-A...................................

  

1

2

3

  1. H1–43: Different haplotypy
  2. CHN-QH: Bamei pig population
  3. DUR: Duroc pig population
  4. LAN: Landrace pig population
  5. YOR: Yorkshire pig population
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Cellular & Molecular Biology Letters

ISSN: 1689-1392

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