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Table 1 Genes upregulated after DSC1 overexpression both on protein (q-value < 0.05, log2 FC > 0.58) and mRNA level (q-value < 0.05, log2 FC > 1)

From: Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

Gene name

UniProt ID

Protein description

MCF7-DSC1-GFP

vs. MCF7-GFP

MCF7-DSC1-GFP + PTL

vs. MCF7-DSC1-GFP

MCF7-GFP + PTL

vs. MCF7-GFP

MCF7-DSC1-GFP + PTL

vs. MCF7-GFP + PTL

Proteomics

Transcriptomics

Proteomics

Transcriptomics

Proteomics

Transcriptomics

Proteomics

Transcriptomics

log2

FC

q-value

log2

FC

q-value

log2

FC

q-value

log2

FC

q-value

log2

FC

q-value

log2

FC

q-value

log2

FC

q-value

log2

FC

q-value

DSC1

Q08554

Desmocollin-1

4.07

4.98E−49

14.02

6.21E−129

− 0.52

3.31E−28

0.06

0.869

− 1.19

0.027

− 1.38

0.344

4.74

2.07E−40

15.45

1.53E−70

IGFBP5

P24593

Insulin-like growth factor-binding protein 5

2.87

2.92E−04

1.84

2.76E−40

− 2.50

0.014

− 1.03

8.17E−13

− 1.01

0.042

− 2.27

1.63E−60

1.39

0.089

3.08

4.08E−111

MYO5C

Q9NQX4

Unconventional myosin-Vc

2.59

1.10E−03

2.14

2.76E−68

− 0.36

0.010

0.12

0.546

− 0.58

0.137

0.02

0.938

2.81

3.40E−03

2.23

2.34E−74

SPPL2A

Q8TCT8

Signal peptide peptidase-like 2A

2.55

3.83E−04

2.08

3.40E−67

− 0.21

0.141

0.33

0.021

− 0.46

0.073

0.27

0.076

2.81

1.83E−03

2.14

6.81E−71

SLC27A2

O14975

Very long-chain acyl-CoA synthetase

2.37

1.17E−08

1.74

3.52E−14

− 0.55

7.61E−05

− 0.22

0.501

− 0.88

1.36E−03

− 1.24

1.16E−06

2.70

2.03E−07

2.75

7.14E−32

USP8

P40818

Ubiquitin carboxyl-terminal hydrolase 8

2.21

7.99E−07

1.88

6.02E−48

0.24

5.70E−05

0.46

1.45E−03

0.45

0.016

0.38

0.014

2.00

3.92E−11

1.97

2.86E−53

FREM2

Q5SZK8

FRAS1-related extracellular matrix protein 2

1.44

2.20E−14

1.12

1.07E−22

2.28

1.14E−06

− 1.44

7.03E−38

3.59

4.46E−03

− 1.67

9.36E−51

0.14

0.131

1.35

1.61E−32

RHOB

P62745

Rho-related GTP-binding protein RhoB

1.24

1.17E−07

1.06

7.28E−10

− 0.55

1.26E−06

− 0.11

0.695

0.12

0.162

0.46

0.013

0.57

2.52E−04

0.48

0.017

TMOD3

Q9NYL9

Tropomodulin-3

1.06

8.46E−16

1.70

1.90E−45

0.16

1.42E−03

0.23

0.131

0.29

2.09E−04

0.00

0.992

0.93

2.21E−14

1.93

1.40E−58

TOM1L1

O75674

TOM1-like protein 1

1.03

1.01E−06

1.18

1.16E−21

0.11

7.91E−03

− 0.07

0.728

0.18

0.039

− 0.17

0.302

0.95

1.38E−04

1.28

3.87E−25

FKBP10

Q96AY3

Peptidyl-prolyl cis–trans isomerase FKBP10

0.95

0.013

1.24

7.16E−14

− 0.46

0.021

− 0.73

2.97E−05

− 0.67

5.26E−04

− 1.44

7.32E−17

1.17

0.017

1.95

1.65E−30

CKMT1A

P12532

Creatine kinase U-type, mitochondrial

0.94

7.41E−07

1.32

1.47E−06

− 0.41

2.53E−03

− 0.29

0.412

− 0.67

1.37E−06

0.01

0.984

1.20

8.28E−09

1.01

4.75E−04

LXN

Q9BS40

Latexin

0.86

2.51E−12

2.57

1.01E−65

− 0.33

1.39E−03

1.18

1.60E−14

0.20

0.020

1.21

7.20E−15

0.34

8.17E−06

2.53

6.06E−66

MYO5A

Q9Y4I1

Unconventional myosin-Va

0.85

7.98E−05

1.72

5.19E−33

− 0.06

0.125

0.75

6.53E−07

− 0.38

0.023

0.49

2.30E−03

1.18

2.42E−04

1.98

2.39E−44

LMCD1

Q9NZU5

LIM and cysteine-rich domains protein 1

0.83

1.40E−03

1.45

1.44E−13

0.26

8.84E−03

1.54

6.55E−18

0.59

1.57E−03

1.59

5.95E−17

0.51

0.011

1.39

1.57E−14

  1. PTL parthenolide