Ladunga, I. Large-scale predictions of secretory proteins from mammalian genomic and EST sequences. Curr. Opin. Biotechnol.
11 (2000) 13–18.
Article
PubMed
CAS
Google Scholar
Fukuda, M.E., Iwadate, Y., Machida, T., Hiwasa, T., Nimura, Y., Nagai, Y., Takiguchi, M., Tanzawa, H., Yamaura, A. and Seki, N. Cathepsin D is a potential serum marker for poor prognosis in glioma patients. Cancer Res.
65 (2005) 5190–5194.
Article
PubMed
CAS
Google Scholar
Wu, C.C., Chien, K.Y., Tsang, N.M., Chang, K.P., Hao, S.P., Tsao, C.H., Chang, Y.S. and Yu, J.S. Cancer cell-secreted proteomes as a basis for searching potential tumor markers: nasopharyngeal carcinoma as a model. Proteomics
5 (2005) 3173–3182.
Article
PubMed
CAS
Google Scholar
Mignatti, P., Morimoto, T. and Rifkin, D.B. Basic fibroblast growth factor, a protein devoid of secretory signal sequence, is released by cells via a pathway independent of the endoplasmic reticulum-Golgi complex. J. Cell. Physiol.
151 (1992) 81–93.
Article
PubMed
CAS
Google Scholar
Rubartelli, A., Cozzolino, F., Talio, M. and Sitia, R. A novel secretory pathway for interleukin-1, a protein lacking a signal sequence. EMBO J.
9 (1990) 1503–1510.
PubMed
CAS
Google Scholar
Marcel, T., Sarah, H. and Steven, L.C. The nonclassic secretion of thioredoxin is not sensitive to redox state. Am. J. Physiol. Cell Physiol.
284 (2003) 1272–1279.
Google Scholar
Walter, N. The mystery of nonclassical protein secretion: A current view on cargo proteins and potential export routes. Eur. J. Biochem.
270 (2003) 2109–2119.
Article
Google Scholar
Cleves, A.E. Protein transport: The nonclassical ins and outs. Curr. Biol.
7 (1997) 318–320.
Article
Google Scholar
Wang, W., Brunet, F.G., Nevo, E. and Long, M. Origin of Sphinx, a young chimeric RNA gene in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA
99 (2002) 4448–4453.
Article
PubMed
CAS
Google Scholar
Wang, W., Zhang, J., Alvarez, C., Llopart, A. and Long, M. The origin of the jingwei gene and the complex modular structure of its parental gene, yellow emperor, in D. melanogaster. Mol Biol. Evol.
17 (2000) 1294–1301.
PubMed
CAS
Google Scholar
Bendtsen, J.D., Kiemer, L., Fausbøll, A. and Brunak S. Non-classical protein secretion in bacteria. BMC Microbiology
5 (2005) 58.
Article
PubMed
Google Scholar
Bendtsen, J.D., Jensen, L. J., Blom, N., Heijne, G.V. and Brunak S. Feature based prediction of non-classical and leaderless protein secretion. Protein Eng. Des. Sel.
17 (2004) 349–356.
Article
PubMed
CAS
Google Scholar
Gomi, M., Sonoyama, M. and Mitaku S. High performance system for signal peptide prediction: SOSUI signal. Chem. Bio Info. J.
4 (2004) 142–147.
Article
CAS
Google Scholar
Lu, Z., Szafron, D., Greiner, R., Lu, P., Wishart, D.S., Poulin, B., Anvik, J., Macdonell, C. and Eisner, R. Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics
4 (2004) 547–556.
Article
Google Scholar
Higgins, D., Thompson, J., Gibson, T., Thompson, J.D., Higgins, D.G. and Gibson, T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Res.
22 (1994) 4673–4680.
PubMed
Google Scholar
Korber, B. HIV signature and sequence variation analysis. In: Computational Analysis of HIV Molecular Sequences (Rodrigo, A.G. and Learn, G.H., Eds.) Kluwer Academic Publishers, Dordrecht, Netherlands (2000) 55–72.
Google Scholar
Blom, N., Gammeltoft, S. and Brunak S. Sequence-and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol.
294 (1999) 1351–1362.
Article
PubMed
CAS
Google Scholar
Gasteiger, E., Hoogland, C., Gattiker, A., Duvaud, S., Wilkins, M.R., Appel, R.D. and Bairoch, A. Protein identification and analysis tools on the ExPASy server. In: The Proteomics Protocols Handbook (Walker, J.M. Ed.) Humana Press, Totowa, New York (2005) 571–607.
Google Scholar
Zhang, J.Z. Evolution of the human ASPM gene, a major determinant of brain size. Genetics
165 (2003) 2063–2070.
PubMed
CAS
Google Scholar
Philippe, D., Will, H., Guy B. and Denis L.B. Brefeldin A-induced prosomatostatin N-glycosylation in AtT20 cells. Biochem. Biophys. Res. Commun.
296 (2002) 618–624.
Article
Google Scholar
Klausner, R.D., Donaldson, J.G. and Lippincott-Schwartz J. Brefeldin A: insights into the control of membrane traffic and organelle structure. J. Cell Biol.
116 (1992) 1071–1080.
Article
PubMed
CAS
Google Scholar