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Identification of microsatellite markers in the rye genome

Cellular & Molecular Biology Letters volume 11, pages 291–298 (2006)Cite this article

Abstract

The rye genomic library, which consists of DNA fragments in the range of 0.5–1.1 kb, was screened for the presence of tri-and tetranucleotide and compound microsatellites. Of the 1,600,000 clones analysed, 102 clones were positive and 41 were suitable for SSR primer pair design. Twenty-six primer pairs amplified specific products, and six of them were capable of detecting polymorphism among 30 rye accessions of different genetic backgrounds. Using a set of Chinese Spring-Imperial wheat-rye addition lines, it was possible to locate 3 newly identified microsatellites on chromosomes 3R, 4R and 7R.

Abbreviations

SSR:

simple sequence repeat

ISSR:

inter-simple sequence repeat

SAMPL:

selective amplification of microsatellite polymorphic loci

EST:

expressed sequence tags

IS:

insert size [bp]

GmS:

genome size [bp]

GS:

genetic similarity

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Author information

Affiliations

  1. Department of Plant Genetics, Breeding and Biotechnology, Warsaw Agricultural University, Nowoursynowska 166, 02-787, Warszawa, Poland

    Hanna Bolibok, Monika Rakoczy-Trojanowska & Małgorzata Wyrzykowska

  2. Plant Breeding and Acclimatization Institute, Radzików, 05-870, Błonie, Poland

    Magdalena Radecka & Wacław Orczyk

Authors
  1. Hanna Bolibok
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  2. Monika Rakoczy-Trojanowska
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  3. Małgorzata Wyrzykowska
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  4. Magdalena Radecka
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  5. Wacław Orczyk
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Corresponding author

Correspondence to Monika Rakoczy-Trojanowska.

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Bolibok, H., Rakoczy-Trojanowska, M., Wyrzykowska, M. et al. Identification of microsatellite markers in the rye genome. Cell. Mol. Biol. Lett. 11, 291–298 (2006). https://doi.org/10.2478/s11658-006-0023-5

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Key words

  • Rye
  • Genomic library
  • SSR
  • Microsatellite
  • Wheat-rye addition lines

Cellular & Molecular Biology Letters

ISSN: 1689-1392

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